{"id": "2026-10-18-wiki-pr1-checks", "date": "2026-10-18", "time_mst": "1:29 PM", "datetime_mst": "2026-10-18T13:29:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki main", "channel_type": "pr-event", "summary": "Wiki PR #1 was merged. It added the checks every later bot PR must pass: site build, link check and claim guard.", "refs": [{"type": "pr", "label": "wiki PR #1", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/1"}], "status_label": "Not claimed", "location": "wiki_main", "source": "GitHub pull request record (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "2026-10-19-wiki-pr5-ai-vector", "date": "2026-10-19", "time_mst": "8:06 AM", "datetime_mst": "2026-10-19T08:06:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki main", "channel_type": "pr-event", "summary": "Wiki PR #5 was merged. It added the files other AIs read: the progress feed, the search index, robots.txt and the participation rules.", "refs": [{"type": "pr", "label": "wiki PR #5", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/5"}], "status_label": "Not claimed", "location": "wiki_main", "source": "GitHub pull request record (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "2026-10-19-wiki-prs2-4-merged", "date": "2026-10-19", "time_mst": "7:36 PM", "datetime_mst": "2026-10-19T19:36:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki main", "channel_type": "pr-event", "summary": "Wiki PRs #2, #3 and #4 (the first run-log updates) were merged between 7:36 and 7:42 PM. The research they describe is on the WetLabEngine research branch, not on main.", "refs": [{"type": "pr", "label": "wiki PR #2", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/2"}, {"type": "pr", "label": "wiki PR #3", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/3"}, {"type": "pr", "label": "wiki PR #4", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/4"}], "status_label": "Not claimed", "location": "wiki_main", "source": "GitHub pull request record (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "2026-10-20-wiki-pr6-opened", "date": "2026-10-20", "time_mst": "5:52 AM", "datetime_mst": "2026-10-20T05:52:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "Aaron Spradlin", "channel_type": "pr-event", "summary": "Wiki Bot opened wiki PR #6. Since then both Wiki Bot and Grok Bot add their run-log updates to this one PR, which waits for Aaron.", "refs": [{"type": "pr", "label": "wiki PR #6", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/6"}, {"type": "commit", "label": "79c1ba3", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/79c1ba3"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-79c1ba3", "date": "2026-10-20", "time_mst": "5:52 AM", "datetime_mst": "2026-10-20T05:52:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: draft 28 original review evidence published (WetLabEngine d9b2fa15, proteinfolding-gpt)", "refs": [{"type": "commit", "label": "79c1ba3", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/79c1ba3"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-03cd319", "date": "2026-10-20", "time_mst": "8:52 AM", "datetime_mst": "2026-10-20T08:52:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log + ledger: single-event receiver gain (Gemini ACCEPTED, run 39429834992), fixed-record acquisition note, Grok Bot challenge note (WetLabEngine aa5aa96c..b2831f6f; Restricted, research branch, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "03cd319", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/03cd319"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-20-direction-update", "date": "2026-10-20", "time_mst": "11:51 AM", "datetime_mst": "2026-10-20T11:51:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki readers", "channel_type": "run-log", "summary": "Wiki Bot logged Aaron's Oct 20 direction: the ChatGPT research session builds the main argument, Grok tests its weakest step, and Gemini reviews.", "refs": [{"type": "commit", "label": "6423103", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/64231035"}, {"type": "commit", "label": "da226ff", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/da226ff"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on wiki PR #6 (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-da226ff", "date": "2026-10-20", "time_mst": "11:51 AM", "datetime_mst": "2026-10-20T11:51:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: Aaron's 2026-10-20 direction update (WetLabEngine 64231035; Not claimed, direction note only, research branch, not on main)", "refs": [{"type": "commit", "label": "da226ff", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/da226ff"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-20-nightly-update-comment", "date": "2026-10-20", "time_mst": "7:02 PM", "datetime_mst": "2026-10-20T19:02:00-07:00", "from": "proteinfolding-grokbot account (nightly update)", "to": "Aaron Spradlin", "channel_type": "pr-comment", "summary": "A \"Nightly update\" comment on PR #6 summarized commit e828f02 and said no existing status changed.", "refs": [{"type": "pr", "label": "wiki PR #6", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/6"}, {"type": "commit", "label": "e828f02", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/e828f02"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "GitHub pull request record (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-e828f02", "date": "2026-10-20", "time_mst": "7:02 PM", "datetime_mst": "2026-10-20T19:02:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log + ledger: PR107 scope clarification (Gemini ACCEPTED, run 39449286888), GPT source-event construction (PR108), Grok realization attempt NOT_DERIVED (PR109)", "refs": [{"type": "commit", "label": "e828f02", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/e828f02"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-6e0631f", "date": "2026-10-21", "time_mst": "2:49 PM", "datetime_mst": "2026-10-21T14:49:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: GPT operation-first course correction (WetLabEngine def537e9, Not claimed)", "refs": [{"type": "commit", "label": "6e0631f", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/6e0631f"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-21-pr111-opened", "date": "2026-10-21", "time_mst": "4:18 PM", "datetime_mst": "2026-10-21T16:18:00-07:00", "from": "Grok Bot", "to": "proteinfolding-gpt (ChatGPT research session and dot)", "channel_type": "pr-event", "summary": "At Aaron's request, Grok Bot opened WetLabEngine PR #111 as one shared, append-only discussion thread for the agents and invited proteinfolding-gpt. Nobody edits another agent's entry, and Gemini reviews run only in GitHub Actions.", "refs": [{"type": "pr", "label": "WetLabEngine PR #111", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111"}, {"type": "pr-comment", "label": "comment 6328726202", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6328726202"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "WetLabEngine PR #111 comments (public)", "does_not_show": "The thread is a discussion log, not reviewed results. Not merged to the research branch or main."}
{"id": "2026-10-21-wiki-logs-pr111", "date": "2026-10-21", "time_mst": "5:55 PM", "datetime_mst": "2026-10-21T17:55:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki readers", "channel_type": "run-log", "summary": "Wiki Bot added a run-log entry about the new thread so readers and other AIs can follow it.", "refs": [{"type": "commit", "label": "ca1de49", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/ca1de49"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-ca1de49", "date": "2026-10-21", "time_mst": "5:55 PM", "datetime_mst": "2026-10-21T17:55:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log + ledger: balanced sibling contrast and exact balanced retention (both Gemini ACCEPTED, runs 39693706755 / 39698061996), Grok Bot agent thread PR #111 (WetLabEngine def537e9..b8adfb56; Restricted, research branch, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "ca1de49", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/ca1de49"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-21-first-pass-addendum", "date": "2026-10-21", "time_mst": "7:04 PM", "datetime_mst": "2026-10-21T19:04:00-07:00", "from": "Grok Bot, then Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "First time the evening pattern appears: Grok Bot's nightly update logged thread entries T-013 to T-015 at 7:04 PM, and Wiki Bot added only what was still missing (T-016 to T-020) at 8:54 PM.", "refs": [{"type": "commit", "label": "d2e8077", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/d2e8077"}, {"type": "commit", "label": "45c05d9", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/45c05d9"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-d2e8077", "date": "2026-10-21", "time_mst": "7:04 PM", "datetime_mst": "2026-10-21T19:04:00-07:00", "from": "Grok Bot (nightly pass)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-013 to T-015 (PR #111 head c1285172; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "d2e8077", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/d2e8077"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-45c05d9", "date": "2026-10-21", "time_mst": "8:54 PM", "datetime_mst": "2026-10-21T20:54:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-016 to T-020 (PR #111 head 7f065c02; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "45c05d9", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/45c05d9"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-b9c6b8b", "date": "2026-10-21", "time_mst": "11:47 PM", "datetime_mst": "2026-10-21T23:47:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-020-dot to T-025 (PR #111 head bbd196f3; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "b9c6b8b", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/b9c6b8b"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-d946f7c", "date": "2026-10-22", "time_mst": "2:55 AM", "datetime_mst": "2026-10-22T02:55:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-026-dot to T-032-dot (PR #111 head f88e151e; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "d946f7c", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/d946f7c"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-a07648e", "date": "2026-10-22", "time_mst": "5:55 AM", "datetime_mst": "2026-10-22T05:55:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-032-dot to T-037 (PR #111 head 42a64ebe; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "a07648e", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/a07648e"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-ec7725a", "date": "2026-10-22", "time_mst": "8:53 AM", "datetime_mst": "2026-10-22T08:53:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-038-dot to T-044-dot (PR #111 head 106d2f0b; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "ec7725a", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/ec7725a"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-1b15b1e", "date": "2026-10-22", "time_mst": "11:49 AM", "datetime_mst": "2026-10-22T11:49:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-044-dot to T-052-dot (PR #111 head 95f69a39; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "1b15b1e", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/1b15b1e"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-679d3a2", "date": "2026-10-22", "time_mst": "2:49 PM", "datetime_mst": "2026-10-22T14:49:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-053 to T-064-dot (PR #111 head da82609a; PR #113 Gemini ACCEPTED-CONDITIONAL but open, not merged; Not claimed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "679d3a2", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/679d3a2"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-cd6a4b2", "date": "2026-10-22", "time_mst": "5:53 PM", "datetime_mst": "2026-10-22T17:53:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log + ledger: Theorem O ordering reduction (Gemini ACCEPTED, run 39869344301; PR #112 merged to research at 3ceb8142) and agent thread T-064-dot to T-071-dot (PR #111 head eb4ebeaa); Restricted / Not claimed, research branch, not on main, NOT_DERIVED", "refs": [{"type": "commit", "label": "cd6a4b2", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/cd6a4b2"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-4f815e3", "date": "2026-10-22", "time_mst": "7:07 PM", "datetime_mst": "2026-10-22T19:07:00-07:00", "from": "Grok Bot (nightly pass)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-071-dot to T-073 (PR #111 head b7768a6b; Prop K and Lemma E, Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "4f815e3", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/4f815e3"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-193bf4d", "date": "2026-10-22", "time_mst": "8:51 PM", "datetime_mst": "2026-10-22T20:51:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-073-dot (PR #111 head 8a874963; dot agrees with Lemma E, withdraws stagewise caution; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "193bf4d", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/193bf4d"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-22-busiest-thread-day", "date": "2026-10-22", "time_mst": null, "datetime_mst": "2026-10-22", "from": "proteinfolding-gpt and proteinfolding-grokbot", "to": "WetLabEngine PR #111", "channel_type": "pr-comment", "summary": "Busiest thread day so far: 53 comments (31 from proteinfolding-gpt, 22 from proteinfolding-grokbot).", "refs": [{"type": "pr", "label": "WetLabEngine PR #111", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "WetLabEngine PR #111 comments (public)", "does_not_show": "Comment counts measure activity, not results."}
{"id": "wiki-pr6-ce2ec62", "date": "2026-10-23", "time_mst": "8:56 AM", "datetime_mst": "2026-10-23T08:56:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-074 to T-075-dot (PR #111 head 6c32aa63; reconstruction parked, shifted boundary response separates star/chain carriers, dot finds no existing shifted-family consumer; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "ce2ec62", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/ce2ec62"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-44094df", "date": "2026-10-23", "time_mst": "11:52 AM", "datetime_mst": "2026-10-23T11:52:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-076 to T-081 and draft PR #114 (PR #111 head e6a0d3c2; (m,k) pruning summary bounds but does not determine shifted boundary response; Not claimed, unreviewed, no Gemini review, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "44094df", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/44094df"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-cb80991", "date": "2026-10-23", "time_mst": "2:50 PM", "datetime_mst": "2026-10-23T14:50:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: PR #114 Gemini ACCEPTED (run 40022076364, open PR, not merged to research) and agent thread T-082 to T-083 (PR #111 head 5c20e87c; k = (P-S)w after supplied preload; Not claimed, T-083 unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "cb80991", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/cb80991"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-9340dc7", "date": "2026-10-23", "time_mst": "5:54 PM", "datetime_mst": "2026-10-23T17:54:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-084 to T-091 and T-089/090-dot (PR #111 head b93560b4; preload route stopped, Theorem N scoped, target G1 unearned; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "9340dc7", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/9340dc7"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-2701a65", "date": "2026-10-23", "time_mst": "7:05 PM", "datetime_mst": "2026-10-23T19:05:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: source note for T-089/090-dot verbatim transcription (PR #111 head e3d997ef; no new research content; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "2701a65", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/2701a65"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-f8e7f33", "date": "2026-10-23", "time_mst": "11:50 PM", "datetime_mst": "2026-10-23T23:50:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-092 to T-094 plus T-093-dot (PR #111 head d7ae124f; Prop L bound proved, Lemma 2 corrected to Lemma 2'; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "f8e7f33", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/f8e7f33"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-3036cb2", "date": "2026-10-24", "time_mst": "8:49 AM", "datetime_mst": "2026-10-24T08:49:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-095 to T-100 plus T-095-dot and T-098-dot (PR #111 head b85baec1; first gap localized to receiver addition +b_s(v), T-099 pullback map parked by T-100, dot focus-auditor role; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "3036cb2", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/3036cb2"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-018cec8", "date": "2026-10-24", "time_mst": "11:56 AM", "datetime_mst": "2026-10-24T11:56:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: T-100-dot-a/b transcriptions and dot whole-history RCR conditioning attempt (PR #111 head db165d10, comments 6386335125, 6387638177, 6387673561; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "018cec8", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/018cec8"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-e5eb560", "date": "2026-10-24", "time_mst": "2:55 PM", "datetime_mst": "2026-10-24T14:55:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: T-100-dot-c transcription, T-101 whole-view consumer attempt and T-102 prefix-record RCR test (PR #111 head 2b91ba96, comment 6388211403; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "e5eb560", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/e5eb560"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-d010c75", "date": "2026-10-24", "time_mst": "5:54 PM", "datetime_mst": "2026-10-24T17:54:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: T-103 guarded-addition candidate with full-scan control (PR #111 head 1a6dea22; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "d010c75", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/d010c75"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-24-t104-team-assignments", "date": "2026-10-24", "time_mst": "6:53 PM", "datetime_mst": "2026-10-24T18:53:00-07:00", "from": "ChatGPT research session (approved by Aaron)", "to": "Grok Bot and dot", "channel_type": "run-log", "summary": "Thread entry T-104 posted team roles that Aaron approved: the ChatGPT session builds, Grok Bot challenges, and dot checks. Wiki Bot logged it.", "refs": [{"type": "commit", "label": "f698f74", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/f698f7405d537480c117ea5aae4cc1664f7db463"}, {"type": "commit", "label": "96c6ef2", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/96c6ef2"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on wiki PR #6 (public)", "does_not_show": "Unreviewed discussion entries; no claim status change."}
{"id": "wiki-pr6-96c6ef2", "date": "2026-10-24", "time_mst": "6:53 PM", "datetime_mst": "2026-10-24T18:53:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: T-104 bounded invocation attempt, team assignments, and dot v16.26 consumer trace (PR #111 head f698f740, comments 6391751926, 6391767506; Not claimed, unreviewed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "96c6ef2", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/96c6ef2"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-24-cycle-daily", "date": "2026-10-24", "time_mst": null, "datetime_mst": "2026-10-24", "from": "Grok Bot (relaying Aaron)", "to": "Retained Atlas Wiki Bot", "channel_type": "handoff", "summary": "Grok Bot passed on Aaron's request to run the wiki update once a day instead of every three hours. Wiki Bot moved it to about 7:00 PM daily and confirmed.", "refs": [], "status_label": "Not claimed", "location": "wiki_ops", "source": "bot run notes (private; summarized, not quoted)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-99ddc30", "date": "2026-10-25", "time_mst": "9:00 AM", "datetime_mst": "2026-10-25T09:00:00-07:00", "from": "not recorded (shared proteinfolding-grokbot account)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-105 to T-114 and draft PR #115 (PR #111 head f78c9289, comments 6392191890, 6392861713, 6399368829, 6399565727, 6399847102; Not claimed, unreviewed / PR #115 run 40209065656 failed at argument-review, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "99ddc30", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/99ddc30"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-ddf6b52", "date": "2026-10-25", "time_mst": "7:05 PM", "datetime_mst": "2026-10-25T19:05:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-115 to T-136 and draft PRs #115 to #117 (PR #111 head 20d006bb, comments 6403811748, 6403859480, 6404153120, 6406115432; Not claimed, internal Gemini review records only, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "ddf6b52", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/ddf6b52"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-2b75290", "date": "2026-10-26", "time_mst": "7:06 PM", "datetime_mst": "2026-10-26T19:06:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-137 to T-156, research-branch P1 notes and draft PRs #117 to #119 (PR #111 head b7f9a695, research 398c04f2, comments 6431385806, 6431902279, 6431893700; Not claimed, P1 review blocked by Gemini credit exhaustion, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "2b75290", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/2b75290"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-26-gemini-402", "date": "2026-10-26", "time_mst": null, "datetime_mst": "2026-10-26", "from": "Gemini (WetLabEngine review workflow)", "to": "PR #119 thread", "channel_type": "run-log", "summary": "The Gemini review of draft PR #119 could not run because the review credits had run out, and the thread asked not to retry yet. The bots only record Gemini results.", "refs": [{"type": "review-run", "label": "run 40435877307", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/40435877307"}, {"type": "pr", "label": "WetLabEngine PR #119", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/119"}, {"type": "commit", "label": "2b75290", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/2b75290"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on wiki PR #6 (public)", "does_not_show": "A blocked review is not a result."}
{"id": "2026-10-27-pass-addendum", "date": "2026-10-27", "time_mst": "6:57 PM", "datetime_mst": "2026-10-27T18:57:00-07:00", "from": "Grok Bot, then Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Grok Bot's nightly update logged T-157 to T-182 (6:57 PM). Wiki Bot added one note on dot's T-182 correction (7:02 PM).", "refs": [{"type": "commit", "label": "6c14993", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/6c14993"}, {"type": "commit", "label": "4e2e2b5", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/4e2e2b5"}, {"type": "pr-comment", "label": "comment 6458316059", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6458316059"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-6c14993", "date": "2026-10-27", "time_mst": "6:57 PM", "datetime_mst": "2026-10-27T18:57:00-07:00", "from": "Grok Bot (nightly pass)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-157 to T-182, PR #119/#120 Gemini acceptance, research-branch publications #121/#122 (PR #111 head 026dc9e9, research cfe26c36; Not claimed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "6c14993", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/6c14993"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-4e2e2b5", "date": "2026-10-27", "time_mst": "7:02 PM", "datetime_mst": "2026-10-27T19:02:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log addendum: dot's T-182 notice scope correction (PR #111 comment 6458316059; Not claimed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "4e2e2b5", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/4e2e2b5"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-27-gemini-retry-accepted", "date": "2026-10-27", "time_mst": null, "datetime_mst": "2026-10-27", "from": "Gemini (WetLabEngine review workflow)", "to": "PR #119 thread", "channel_type": "run-log", "summary": "The PR #119 review ran on retry and came back ACCEPTED. This is an internal review record on a draft PR, not on main.", "refs": [{"type": "review-run", "label": "run 40435877307", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/40435877307"}, {"type": "commit", "label": "6c14993", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/6c14993"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on wiki PR #6 (public)", "does_not_show": "Gemini acceptance is an internal review record, not external peer review, and upgrades no claim."}
{"id": "2026-10-28-pass-addendum", "date": "2026-10-28", "time_mst": "7:01 PM", "datetime_mst": "2026-10-28T19:01:00-07:00", "from": "Grok Bot, then Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Grok Bot's nightly update logged T-183 to T-205 (7:01 PM). Wiki Bot added one note locating two side-branch files (7:02 PM).", "refs": [{"type": "commit", "label": "7396424", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/7396424"}, {"type": "commit", "label": "f260c24", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/f260c24"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-7396424", "date": "2026-10-28", "time_mst": "7:01 PM", "datetime_mst": "2026-10-28T19:01:00-07:00", "from": "Grok Bot (nightly pass)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-183 to T-205, independent Gemini review of event/source proof and research-branch publication #123 (PR #111 head bf345368, research c5cefae1; Not claimed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "7396424", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/7396424"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "wiki-pr6-f260c24", "date": "2026-10-28", "time_mst": "7:02 PM", "datetime_mst": "2026-10-28T19:02:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log addendum: locate side-branch notes bab241f6 (instrument benchmark) and 94f0bc67 (V1730/V1735 follow-up) off the research head; T-204/T-205 affine-gate caveat (Not claimed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "f260c24", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/f260c24"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-29-pass-no-addendum", "date": "2026-10-29", "time_mst": "7:00 PM", "datetime_mst": "2026-10-29T19:00:00-07:00", "from": "Grok Bot, then Retained Atlas Wiki Bot", "to": "wiki PR #6", "channel_type": "commit", "summary": "Grok Bot's nightly update logged T-206 to T-219 (7:00 PM). Wiki Bot checked a few minutes later, found nothing missing, and added nothing.", "refs": [{"type": "commit", "label": "e1dad8b", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/e1dad8b"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "wiki-pr6-e1dad8b", "date": "2026-10-29", "time_mst": "7:00 PM", "datetime_mst": "2026-10-29T19:00:00-07:00", "from": "Grok Bot (nightly pass)", "to": "wiki PR #6", "channel_type": "commit", "summary": "Run log: agent thread T-206 to T-219 and research-branch integration #124, P1 receiver-location resolution (PR #111 head 07a637a7, research d83e51a3; Not claimed, not on main, NOT_DERIVED)", "refs": [{"type": "commit", "label": "e1dad8b", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/e1dad8b"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "wiki git history, PR #6 (public)", "does_not_show": "A wiki commit records sources; it is not itself a result. Badges inside the entry are copied from the sources and are not upgraded."}
{"id": "2026-10-29-t223-correction", "date": "2026-10-29", "time_mst": "9:01 PM", "datetime_mst": "2026-10-29T21:01:00-07:00", "from": "proteinfolding-gpt and UQCF Science Agent", "to": "WetLabEngine PR #111", "channel_type": "pr-comment", "summary": "proteinfolding-gpt challenged T-223 (9:01 PM). The UQCF Science Agent's hourly loop accepted the correction in T-224 (9:18 PM), then fixed a second slip in T-225 (10:15 PM).", "refs": [{"type": "pr-comment", "label": "comment 6514641939", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6514641939"}, {"type": "pr-comment", "label": "comment 6514856025", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6514856025"}, {"type": "pr-comment", "label": "comment 6515098910", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6515098910"}, {"type": "pr-comment", "label": "comment 6515567392", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6515567392"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "WetLabEngine PR #111 comments (public)", "does_not_show": "Unreviewed discussion entries; no claim status change."}
{"id": "2026-10-30-pr125-t226", "date": "2026-10-30", "time_mst": "6:22 AM", "datetime_mst": "2026-10-30T06:22:00-07:00", "from": "proteinfolding-gpt, then UQCF Science Agent", "to": "WetLabEngine PR #111", "channel_type": "pr-comment", "summary": "proteinfolding-gpt opened draft PR #125 (6:22 AM) and posted it to the thread. The UQCF Science Agent copied it in as T-225-gpt and replied with T-226 (7:17 AM).", "refs": [{"type": "pr", "label": "WetLabEngine PR #125", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/125"}, {"type": "pr-comment", "label": "comment 6523918365", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6523918365"}, {"type": "pr-comment", "label": "comment 6524990102", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6524990102"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "WetLabEngine PR #111 comments (public)", "does_not_show": "Draft, unreviewed, not merged, not on main."}
{"id": "2026-10-30-heartbeats", "date": "2026-10-30", "time_mst": "7:00 AM", "datetime_mst": "2026-10-30T07:00:00-07:00", "from": "Retained Atlas Wiki Bot; UQCF Science Agent", "to": "Aaron Spradlin", "channel_type": "heartbeat", "summary": "Morning reports: Wiki Bot said one clean wiki update ran and nothing merged to main. The UQCF Science Agent said about 24 hourly research runs had no failures.", "refs": [{"type": "pr", "label": "wiki PR #6", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/6"}], "status_label": "Not claimed", "location": "wiki_ops", "source": "bot run notes (private; summarized, not quoted)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "2026-10-30-bot-comms-page", "date": "2026-10-30", "time_mst": "7:26 AM", "datetime_mst": "2026-10-30T07:26:00-07:00", "from": "Aaron Spradlin (voice request)", "to": "Retained Atlas Wiki Bot", "channel_type": "handoff", "summary": "Aaron asked for a page showing how the bots communicate. Wiki Bot drafted it in a separate PR for his review.", "refs": [{"type": "pr", "label": "wiki PR #7", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/7"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "bot run notes (private; summarized, not quoted)", "does_not_show": "Not a research result and not a claim; no claim status changes."}
{"id": "2026-10-30-merges-authorized", "date": "2026-10-30", "time_mst": "7:40 AM", "datetime_mst": "2026-10-30T07:40:00-07:00", "from": "Aaron Spradlin (voice request)", "to": "Retained Atlas Wiki Bot", "channel_type": "handoff", "summary": "By voice, Aaron allowed Wiki Bot to merge wiki PRs. Wiki Bot merged PR #7 (this page) as 68c53f24, then merged main into PR #6, rebuilt the generated files to clear a search.json conflict, and merged PR #6. Coordination record only; no claim status changed.", "refs": [{"type": "pr", "label": "wiki PR #7", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/7"}, {"type": "commit", "label": "68c53f2", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/68c53f24e171bf6c752ddf62a23f4e3d31a53970"}, {"type": "pr", "label": "wiki PR #6", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/6"}], "status_label": "Not claimed", "location": "wiki_main", "source": "bot run notes (private; summarized, not quoted)", "does_not_show": "A merge moves wiki pages onto the wiki main branch. It does not move WetLabEngine research-branch work onto WetLabEngine main or change any claim status."}
{"id": "2026-10-30-nightly-pr8", "date": "2026-10-30", "time_mst": "6:57 PM", "datetime_mst": "2026-10-30T18:57:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki PR #8", "channel_type": "run-log", "summary": "Nightly wiki cycle, its own pull request rather than PR #6. Commit ece5d0c records T-220 to T-231, research-branch integrations #117, #113, #114 and #115, and draft #125. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.", "refs": [{"type": "pr", "label": "wiki PR #8", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/8"}, {"type": "commit", "label": "ece5d0c", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/ece5d0cddd28f8f55584d8008272b6840a339f37"}, {"type": "link", "label": "link", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/blob/ece5d0cddd28f8f55584d8008272b6840a339f37/docs/wiki/physical-bridge-run-log.md"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "wiki git history and the physical-bridge run log on main (public)", "does_not_show": "A wiki commit records sources. It is not itself a result, not a claim-status change, and not WetLabEngine main. Thread detail stays on the physical-bridge run log."}
{"id": "2026-10-31-nightly-pr9", "date": "2026-10-31", "time_mst": "6:59 PM", "datetime_mst": "2026-10-31T18:59:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki PR #9", "channel_type": "run-log", "summary": "Nightly wiki cycle, its own pull request rather than PR #6. Commit 8fef15e records T-232 to T-238, research-branch integrations #118, #116 and #126, and drafts #127 and #128. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.", "refs": [{"type": "pr", "label": "wiki PR #9", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/9"}, {"type": "commit", "label": "8fef15e", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/8fef15ed869c58777350375e020e82f2b54e5a8a"}, {"type": "link", "label": "link", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/blob/8fef15ed869c58777350375e020e82f2b54e5a8a/docs/wiki/physical-bridge-run-log.md"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "wiki git history and the physical-bridge run log on main (public)", "does_not_show": "A wiki commit records sources. It is not itself a result, not a claim-status change, and not WetLabEngine main. Thread detail stays on the physical-bridge run log."}
{"id": "2026-11-01-nightly-pr10", "date": "2026-11-01", "time_mst": "7:02 PM", "datetime_mst": "2026-11-01T19:02:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki PR #10", "channel_type": "run-log", "summary": "Nightly wiki cycle, its own pull request rather than PR #6. Commit ff2dc92 records T-239 to T-253, with PR #129 merged into the research branch only. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.", "refs": [{"type": "pr", "label": "wiki PR #10", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/10"}, {"type": "commit", "label": "ff2dc92", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/ff2dc92cd7625a960a19f30d64efab43d3063001"}, {"type": "link", "label": "link", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/blob/ff2dc92cd7625a960a19f30d64efab43d3063001/docs/wiki/physical-bridge-run-log.md"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "wiki git history and the physical-bridge run log on main (public)", "does_not_show": "A wiki commit records sources. It is not itself a result, not a claim-status change, and not WetLabEngine main. Thread detail stays on the physical-bridge run log."}
{"id": "2026-11-02-nightly-pr11", "date": "2026-11-02", "time_mst": "7:06 PM", "datetime_mst": "2026-11-02T19:06:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki PR #11", "channel_type": "run-log", "summary": "Nightly wiki cycle, its own pull request rather than PR #6. Commit cd5d191 records T-254 to T-283 and a native joint-event source audit the commit subject calls NO_CANDIDATE, research branch only. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.", "refs": [{"type": "pr", "label": "wiki PR #11", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/11"}, {"type": "commit", "label": "cd5d191", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/cd5d19114b9cc49e34a709241a9ccfe82b28bdf9"}, {"type": "link", "label": "link", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/blob/cd5d19114b9cc49e34a709241a9ccfe82b28bdf9/docs/wiki/physical-bridge-run-log.md"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "wiki git history and the physical-bridge run log on main (public)", "does_not_show": "A wiki commit records sources. It is not itself a result, not a claim-status change, and not WetLabEngine main. Thread detail stays on the physical-bridge run log."}
{"id": "2026-11-03-merges-pr8-11", "date": "2026-11-03", "time_mst": "7:34 AM", "datetime_mst": "2026-11-03T07:34:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki main", "channel_type": "pr-event", "summary": "Wiki PRs #8, #9, #10 and #11 were merged between 7:34 and 7:36 AM MST as e9050221, 9428de30, c939eb02 and 18ccbd51. The GitHub merger login is the shared account. Which bot acted is not recorded. These merges publish the Oct 30 through Nov 2 run-log pages onto wiki main. They do not move the WetLabEngine research they describe onto WetLabEngine main, and no claim status changed.", "refs": [{"type": "pr", "label": "wiki PR #8", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/8"}, {"type": "pr", "label": "wiki PR #9", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/9"}, {"type": "pr", "label": "wiki PR #10", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/10"}, {"type": "pr", "label": "wiki PR #11", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/11"}, {"type": "commit", "label": "e905022", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/e9050221cf8dc484e5c3cc38cb31d871bdd458f1"}, {"type": "commit", "label": "9428de3", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/9428de309f7869a382e5cc35129399e925452bd7"}, {"type": "commit", "label": "c939eb0", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/c939eb02cdff7528d39e9b518060c2affdf76e0e"}, {"type": "commit", "label": "18ccbd5", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/18ccbd511f5819df5e8309d3b7f7ae5038149f99"}], "status_label": "Not claimed", "location": "wiki_main", "source": "GitHub pull request record (public)", "does_not_show": "A wiki merge publishes wiki pages onto wiki main. It does not move WetLabEngine research-branch or agent-thread work onto WetLabEngine main, and it changes no claim status."}
{"id": "2026-11-03-nightly-pr12", "date": "2026-11-03", "time_mst": "7:05 PM", "datetime_mst": "2026-11-03T19:05:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki PR #12", "channel_type": "run-log", "summary": "Nightly wiki cycle, its own pull request rather than PR #6. Commit 3791af5 records T-284 to T-313, PRs #134 and #133 on the research branch only, and source-recovery draft #135. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.", "refs": [{"type": "pr", "label": "wiki PR #12", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/12"}, {"type": "commit", "label": "3791af5", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/3791af5cd57bd81b3d4c76d7cee8d247dd774cd5"}, {"type": "link", "label": "link", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/blob/3791af5cd57bd81b3d4c76d7cee8d247dd774cd5/docs/wiki/physical-bridge-run-log.md"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "wiki git history and the physical-bridge run log on main (public)", "does_not_show": "A wiki commit records sources. It is not itself a result, not a claim-status change, and not WetLabEngine main. Thread detail stays on the physical-bridge run log."}
{"id": "2026-11-04-nightly-pr13", "date": "2026-11-04", "time_mst": "7:02 PM", "datetime_mst": "2026-11-04T19:02:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki PR #13", "channel_type": "run-log", "summary": "Nightly wiki cycle, its own pull request rather than PR #6. Commit af6371d records T-314 to T-323 and draft #135 extended with source traces. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.", "refs": [{"type": "pr", "label": "wiki PR #13", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/13"}, {"type": "commit", "label": "af6371d", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/af6371d62db09bf12434372d41216639b2a49314"}, {"type": "link", "label": "link", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/blob/af6371d62db09bf12434372d41216639b2a49314/docs/wiki/physical-bridge-run-log.md"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "wiki git history and the physical-bridge run log on main (public)", "does_not_show": "A wiki commit records sources. It is not itself a result, not a claim-status change, and not WetLabEngine main. Thread detail stays on the physical-bridge run log."}
{"id": "2026-11-05-nightly-pr14", "date": "2026-11-05", "time_mst": "7:02 PM", "datetime_mst": "2026-11-05T19:02:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki PR #14", "channel_type": "run-log", "summary": "Nightly wiki cycle, its own pull request rather than PR #6. Commit f6e1a53 records T-324 to T-358, the commit subject names Lemmas S/V/W, and draft #135 event-sync sources. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.", "refs": [{"type": "pr", "label": "wiki PR #14", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/14"}, {"type": "commit", "label": "f6e1a53", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/f6e1a53d0a1815cdcaa91e893f7fd91f33334087"}, {"type": "link", "label": "link", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/blob/f6e1a53d0a1815cdcaa91e893f7fd91f33334087/docs/wiki/physical-bridge-run-log.md"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "wiki git history and the physical-bridge run log on main (public)", "does_not_show": "A wiki commit records sources. It is not itself a result, not a claim-status change, and not WetLabEngine main. Thread detail stays on the physical-bridge run log."}
{"id": "2026-11-06-nightly-pr15", "date": "2026-11-06", "time_mst": "6:58 PM", "datetime_mst": "2026-11-06T18:58:00-07:00", "from": "proteinfolding-grokbot account (bot not recorded)", "to": "wiki PR #15", "channel_type": "run-log", "summary": "Nightly wiki cycle, its own pull request rather than PR #6. Commit 3064598 records T-359 to T-368 and the commit subject names Gemini-accepted pair-spinor and so(9) Clifford reviews. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.", "refs": [{"type": "pr", "label": "wiki PR #15", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/15"}, {"type": "commit", "label": "3064598", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/3064598ea1f406d35d9c1fae9484cd20d9b85573"}, {"type": "link", "label": "link", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/blob/3064598ea1f406d35d9c1fae9484cd20d9b85573/docs/wiki/physical-bridge-run-log.md"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "wiki git history and the physical-bridge run log on main (public)", "does_not_show": "A wiki commit records sources. It is not itself a result, not a claim-status change, and not WetLabEngine main. Thread detail stays on the physical-bridge run log."}
{"id": "2026-11-07-no-nightly-pr", "date": "2026-11-07", "time_mst": null, "datetime_mst": "2026-11-07", "from": "nightly wiki job (bot not recorded)", "to": "wiki readers", "channel_type": "run-log", "summary": "Nov 7 evening opened no wiki pull request and no PR-check run. The next public catch-up is wiki PR #16 on Nov 8. PR #16's description says the Nov 7-8 WetLabEngine comments inspected do not state a usage-limit skip. This backfill records the missed evening job as a usage-limit failure, from the wiki audit, not from those comments. Which bot would have written the missing pull request is not recorded.", "refs": [{"type": "pr", "label": "wiki PR #16", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/16"}, {"type": "pr", "label": "wiki PR #15", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/15"}], "status_label": "Not claimed", "location": "wiki_ops", "source": "wiki audit for this backfill (summarized); public record is the absence of a Nov 7 evening pull request and PR #16", "does_not_show": "Not a research result. The usage-limit cause is not a WetLabEngine comment finding and not a claim-status change."}
{"id": "2026-11-08-v1696-5-p1-action-link", "date": "2026-11-08", "time_mst": "8:50 AM", "datetime_mst": "2026-11-08T08:50:00-07:00", "from": "Aaron Spradlin (explicit wiki request)", "to": "Retained Atlas Wiki Bot", "channel_type": "handoff", "summary": "Aaron asked for a sourced wiki page on the conditional V1696.5 support-incidence, native P1, and V1694 product-action connection. The page records both support calculations, the later change-current and owner-interface caveats, and the V1696.6 / V1694.5 / V1688.55 source limits. Not claimed, not on WetLabEngine main, native NOT_DERIVED. No ledger claim was added.", "refs": [{"type": "pr", "label": "wiki PR #16", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/16"}, {"type": "commit", "label": "032bb78", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/032bb78a6ccee44aa3e78d8ad59ebfcad687cd86"}, {"type": "pr-comment", "label": "comment 6723050477", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6723050477"}, {"type": "pr-comment", "label": "comment 6723078141", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6723078141"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "this wiki task (public request, summarized)", "does_not_show": "A handoff records a documentation request. It is not a research result, not a derived bridge, and not a claim-status change. The wiki page is not wiki main until the pull request is merged."}
{"id": "2026-11-08-nov7-8-catchup", "date": "2026-11-08", "time_mst": "9:21 AM", "datetime_mst": "2026-11-08T09:21:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #16", "channel_type": "run-log", "summary": "No separate nightly wiki pull request for 2026-11-07 was open. This continuation on PR #16 records agent-thread T-369 through T-389 and draft PRs #136-#140 as Not claimed operational catch-up. The Nov 7-8 comments inspected do not state a usage-limit skip, so none is logged. No claim status changed and nothing was merged.", "refs": [{"type": "pr", "label": "wiki PR #16", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/16"}, {"type": "commit", "label": "6fb7154", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/6fb715421410a2e3637b30cffb46f73a80ade73c"}, {"type": "pr-comment", "label": "comment 6723804810", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6723804810"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "live WetLabEngine PR #111 and this wiki branch (public)", "does_not_show": "A coordination note of a missed nightly wiki pull request. It is not a research result, not a usage-limit finding, and not a claim-status change. Wiki PRs #12-#16 stay open."}
{"id": "2026-11-08-eng-pr16", "date": "2026-11-08", "time_mst": "10:01 AM", "datetime_mst": "2026-11-08T10:01:00-07:00", "from": "UQCF GitHub Engineering Lead", "to": "Retained Atlas Wiki Bot", "channel_type": "pr-comment", "summary": "Merge-prep note on wiki PR #16, comment 6724378301, signed UQCF GitHub Engineering Lead. It does not authorize edits or merging. It flags two still-open generator issues: progress summaries and search text reduce the identifier spelled O, A, and an asterisk down to the two letters OA, and location=research_branch also covers thread-only or diverged review commits, not only commits contained in the research tip. This update records the flags and does not change the generator. Inspected head in that comment was cfe6c704.", "refs": [{"type": "pr-comment", "label": "comment 6724378301", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/16#issuecomment-6724378301"}, {"type": "commit", "label": "cfe6c70", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/cfe6c704d7d1485f7e83aca8cc34216e5ef479ae"}], "status_label": "Not claimed", "location": "wiki_ops", "source": "GitHub pull request comment 6724378301 (public)", "does_not_show": "Not a merge approval, not a scientific certification, and not a claim-status change. The generator issues remain open."}
{"id": "2026-11-08-nightly-t390", "date": "2026-11-08", "time_mst": "7:05 PM", "datetime_mst": "2026-11-08T19:05:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #17", "channel_type": "run-log", "summary": "Nightly catch-up records agent-thread T-390 through T-394 at head b8d9abed, PR #111 comments through 6730177082, and research tip bd661947 as Not claimed. Draft PR heads #135-#140 are unchanged. WetLabEngine main remains be1ab286. The comments inspected do not state a usage-limit skip. No ledger claim was added and nothing was merged.", "refs": [{"type": "pr", "label": "wiki PR #17", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/17"}, {"type": "commit", "label": "b8d9abe", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/b8d9abedc01be07dd55cbe2af9a3b3cfc73c2883"}, {"type": "pr-comment", "label": "comment 6730177082", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6730177082"}, {"type": "commit", "label": "bd66194", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/bd661947ebe97fd2ca356ec0b62e1103f63fd665"}, {"type": "commit", "label": "be1ab28", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/be1ab2865e82cd16857f0a189c75f201cde45577"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "live WetLabEngine PR #111, research tip bd661947, and this wiki branch (public)", "does_not_show": "A coordination note of a wiki catch-up. It is not a research result, not a usage-limit finding, and not a claim-status change. The agent thread and the research tip are not WetLabEngine main."}
{"id": "2026-11-08-gemini-42466420886", "date": "2026-11-08", "time_mst": null, "datetime_mst": "2026-11-08", "from": "Gemini (WetLabEngine review workflow)", "to": "draft PR #140 thread", "channel_type": "run-log", "summary": "Recorded verdict only, from the run log already on main. Actions run 42466420886 is ACCEPTED for the fixed-ledger polar lift on draft PR #140: J is the polarization, the residual derivative is 2J, and descent to the baseline quotient requires J to annihilate ker R_w. The same response's raw native_bridge_status value DERIVED_FROM_SOURCES is rejected in the review disposition. Adopted status remains NOT_DERIVED. A clock for the run itself is not recorded on the run log, so none is added here.", "refs": [{"type": "review-run", "label": "run 42466420886", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42466420886"}, {"type": "pr", "label": "WetLabEngine PR #140", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/140"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on main, 2026-11-08 entry (public)", "does_not_show": "A Gemini line is a recorded review verdict already on the run log. It is not external peer review, not a physical result, not a native bridge, and not a claim-status change. scientific_breakthrough stays false. The rejected DERIVED_FROM_SOURCES field is not adopted."}
{"id": "2026-11-08-orchestration", "date": "2026-11-08", "time_mst": null, "datetime_mst": "2026-11-08", "from": "Aaron Spradlin (approval summarized)", "to": "Retained Atlas Wiki Bot, Grok Bot, and UQCF GitHub Engineering Lead", "channel_type": "handoff", "summary": "Aaron approved an orchestration plan. The Wiki Bot is the only wiki content writer. Grok Bot's 7:00 PM wiki routine is paused. The UQCF GitHub Engineering Lead prepares merges and does not approve them. Nightly reports are change-only. The morning wiki heartbeat is paused. The approval itself is private and is summarized here, not quoted.", "refs": [], "status_label": "Not claimed", "location": "wiki_ops", "source": "this wiki task (private approval summarized, not quoted)", "does_not_show": "Not a research result, not a merge approval, and not a claim-status change. scientific_breakthrough stays false."}
{"id": "2026-11-09-nightly-t395", "date": "2026-11-09", "time_mst": "7:20 PM", "datetime_mst": "2026-11-09T19:20:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #18", "channel_type": "run-log", "summary": "Nightly catch-up records agent-thread T-395 through T-408 at head 11a773d4, PR #111 comments through 6756645537, and research tip d588114a as Not claimed. Draft PR heads #135-#140 are unchanged. Draft #141 head 063a993e and draft #142 head 8054120e, as of 2026-11-10T02:09:12Z, are off the research tip. The ROC-1 and ledger-correction Gemini ACCEPTED lines are recorded review verdicts, not physical results. WetLabEngine main remains be1ab286. The comments inspected do not state a usage-limit skip. No ledger claim was added and nothing was merged. Dedup key #111@11a773d4 + research@d588114a. PR #142 may still move.", "refs": [{"type": "pr", "label": "wiki PR #18", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/18"}, {"type": "commit", "label": "11a773d", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/11a773d4be1ed0469b6c430a6240532a28c683f6"}, {"type": "pr-comment", "label": "comment 6756645537", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6756645537"}, {"type": "commit", "label": "d588114", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/d588114a9958d52def9bd446a8db50640e8a0058"}, {"type": "pr", "label": "WetLabEngine PR #141", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/141"}, {"type": "pr", "label": "WetLabEngine PR #142", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/142"}, {"type": "review-run", "label": "run 42633980069", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42633980069"}, {"type": "review-run", "label": "run 42739273656", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42739273656"}, {"type": "commit", "label": "be1ab28", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/be1ab2865e82cd16857f0a189c75f201cde45577"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "live WetLabEngine PR #111, research tip d588114a, draft PRs #141 and #142, and this wiki branch (public)", "does_not_show": "A coordination note of a wiki catch-up. It is not a research result, not a usage-limit finding, and not a claim-status change. The agent thread, the research tip, and draft PRs #141 and #142 are not WetLabEngine main. A Gemini ACCEPTED line is a recorded review verdict, not a physical result."}
{"id": "2026-11-10-nightly-t409", "date": "2026-11-10", "time_mst": "7:05 PM", "datetime_mst": "2026-11-10T19:05:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki PR #19", "channel_type": "run-log", "summary": "Nightly catch-up records agent-thread T-409 through T-414 at head a2416763, PR #111 comments through 6778676921, and research tip d373865d as Not claimed. proteinfolding-gpt entries are by that account and its stated GPT Work or dot role. proteinfolding-grokbot thread notices and T-responses are Grok Bot / UQCF Science Agent as signed, not the wiki role. Draft PR heads #135-#141 are unchanged. Draft #142 remains 8054120e and is diverged from the new tip. Draft #143 head ed1c2da8 is open, unmerged, and not on the tip. The owner-effect run 42761562725 and fixed-decoder run 42821167329 ACCEPTED lines are recorded review verdicts, not physical results. WetLabEngine main remains be1ab286. The comments inspected do not state a usage-limit skip. No ledger claim was added and nothing was merged. Dedup key #111@a2416763 + research@d373865d.", "refs": [{"type": "pr", "label": "wiki PR #19", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/19"}, {"type": "commit", "label": "a241676", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/a2416763ae820cddf46959e63de492319e8bc898"}, {"type": "pr-comment", "label": "comment 6778676921", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6778676921"}, {"type": "commit", "label": "d373865", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/d373865d27052562d52a55fbe4cd18a263f00fc5"}, {"type": "pr", "label": "WetLabEngine PR #142", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/142"}, {"type": "pr", "label": "WetLabEngine PR #143", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/143"}, {"type": "review-run", "label": "run 42761562725", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42761562725"}, {"type": "review-run", "label": "run 42821167329", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42821167329"}, {"type": "commit", "label": "be1ab28", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/be1ab2865e82cd16857f0a189c75f201cde45577"}], "status_label": "Not claimed · not on main", "location": "wiki_pr_open", "source": "live WetLabEngine PR #111, research tip d373865d, draft PRs #142 and #143, and this wiki branch (public)", "does_not_show": "A coordination note of a wiki catch-up. It is not a research result, not a usage-limit finding, and not a claim-status change. The agent thread, the research tip, and draft PRs #142 and #143 are not WetLabEngine main. A Gemini ACCEPTED line is a recorded review verdict, not a physical result."}
{"id": "2026-11-10-ci-68d3676e", "date": "2026-11-10", "time_mst": "7:11 PM", "datetime_mst": "2026-11-10T19:11:00-07:00", "from": "GitHub Actions (bot not recorded)", "to": "wiki PR #19", "channel_type": "pr-event", "summary": "PR checks on commit 68d3676e completed success at 7:11 PM MST (Actions run 42944159307, job 130272798832). Wiki PR #21's description records that CI passed on that commit. A separate public Engineering Lead comment on PRs #17, #18 and #19 was not found. The PR #16 Engineering Lead note remains the only located merge-prep comment, and it is not a merge approval. Which bot wrote the PR #21 sentence is not recorded beyond the shared account.", "refs": [{"type": "commit", "label": "68d3676", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/68d3676e1c6ca2f354adc25378f5496c019053b7"}, {"type": "review-run", "label": "run 42944159307", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/actions/runs/42944159307"}, {"type": "pr", "label": "wiki PR #19", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/19"}, {"type": "pr", "label": "wiki PR #21", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/21"}, {"type": "pr-comment", "label": "comment 6724378301", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/16#issuecomment-6724378301"}], "status_label": "Not claimed", "location": "wiki_ops", "source": "GitHub Actions run 42944159307 and wiki PR #21 description (public)", "does_not_show": "A green check is not a merge approval, not a scientific result, and not a claim-status change."}
{"id": "2026-11-10-gemini-42633980069", "date": "2026-11-10", "time_mst": null, "datetime_mst": "2026-11-10", "from": "Gemini (WetLabEngine review workflow)", "to": "ROC-1 review record", "channel_type": "run-log", "summary": "Recorded verdict only, from the run log already on main. Actions run 42633980069, model gemini-3.1-pro-preview, returned ACCEPTED with no findings on the frozen scalar ROC-1 argument. The author adjudication adopts that verdict as a correction of the necessity claim and adds no nontriviality postulate. Native bridge remains NOT_DERIVED. Draft PR #141 stays draft.", "refs": [{"type": "review-run", "label": "run 42633980069", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42633980069"}, {"type": "pr", "label": "WetLabEngine PR #141", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/141"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on main, 2026-11-10 T-395 entry (public)", "does_not_show": "A Gemini line is a recorded review verdict already on the run log. It is not external peer review, not a physical result, not a native bridge, and not a claim-status change. scientific_breakthrough stays false."}
{"id": "2026-11-10-gemini-42739273656", "date": "2026-11-10", "time_mst": null, "datetime_mst": "2026-11-10", "from": "Gemini (WetLabEngine review workflow)", "to": "draft PR #142 thread", "channel_type": "run-log", "summary": "Recorded verdict only, from the run log already on main. Actions run 42739273656, model gemini-3.1-pro-preview, records verdict ACCEPTED, with empty findings, missing-assumption, counterexample and limitation lists in the archived review text, and adopted native status NOT_DERIVED. It is a corrected conditional ledger argument on unmerged draft PR #142, not on the research tip and not on WetLabEngine main.", "refs": [{"type": "review-run", "label": "run 42739273656", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42739273656"}, {"type": "pr", "label": "WetLabEngine PR #142", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/142"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on main, 2026-11-10 T-395 entry (public)", "does_not_show": "A Gemini line is a recorded review verdict already on the run log. It is not external peer review, not a physical result, not a native bridge, and not a claim-status change. scientific_breakthrough stays false."}
{"id": "2026-11-10-gemini-42761562725", "date": "2026-11-10", "time_mst": null, "datetime_mst": "2026-11-10", "from": "Gemini (WetLabEngine review workflow)", "to": "owner-effect review on the research branch", "channel_type": "run-log", "summary": "Recorded verdict only, from the run log already on main. Actions run 42761562725, attempt 1, model gemini-3.1-pro-preview, verdict ACCEPTED, with empty findings, missing_assumptions and counterexamples, and native_bridge_status NOT_DERIVED. The author calls the disposition ACCEPTED-CONDITIONAL. The reviewer's next-obligation mention stays inside the recorded supported class. It is not a physical result.", "refs": [{"type": "review-run", "label": "run 42761562725", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42761562725"}, {"type": "commit", "label": "d373865", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/d373865d27052562d52a55fbe4cd18a263f00fc5"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on main, 2026-11-10 T-409 entry (public)", "does_not_show": "A Gemini line is a recorded review verdict already on the run log. It is not external peer review, not a physical result, not a native bridge, and not a claim-status change. scientific_breakthrough stays false. ACCEPTED-CONDITIONAL is the author's name for that recorded disposition, not a claim upgrade."}
{"id": "2026-11-10-gemini-42821167329", "date": "2026-11-10", "time_mst": null, "datetime_mst": "2026-11-10", "from": "Gemini (WetLabEngine review workflow)", "to": "draft PR #143 thread", "channel_type": "run-log", "summary": "Recorded verdict only, from the run log already on main. Actions run 42821167329, attempt 1, model gemini-3.1-pro-preview, verdict ACCEPTED, with empty findings, missing_assumptions and counterexamples, and native NOT_DERIVED, for the fixed global-decoder counterexample on unmerged draft PR #143. The run log also records publication-only run 42822479500, which preserved job logs and made no model call. That run is not a second verdict. The joint-reference rigidity note is outside the freeze.", "refs": [{"type": "review-run", "label": "run 42821167329", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42821167329"}, {"type": "pr", "label": "WetLabEngine PR #143", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/143"}, {"type": "review-run", "label": "run 42822479500", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/actions/runs/42822479500"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "physical-bridge run log on main, 2026-11-10 T-409 entry (public)", "does_not_show": "A Gemini line is a recorded review verdict already on the run log. It is not external peer review, not a physical result, not a native bridge, and not a claim-status change. scientific_breakthrough stays false. Run 42822479500 is not a model verdict."}
{"id": "2026-11-11-runlog-t415", "date": "2026-11-11", "time_mst": "8:23 AM", "datetime_mst": "2026-11-11T08:23:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki readers", "channel_type": "run-log", "summary": "Nightly reading after the previous dedup key #111@a2416763 + research@d373865d. Research tip moved one commit to 8c4f6594. PR #111 head moved to 8a86d82d (T-415 at d89190d0, T-416 correction at 8a86d82d). Comments read: 6788278415, 6798466699, 6798602632, 6798637807, 6798870609 and 6799790426. No newer comment was on the thread at this reading. proteinfolding-gpt signs GPT Work or dot. proteinfolding-grokbot thread notices and T-responses sign the UQCF Science Agent, not the wiki role. The science is summarized on the 2026-11-11 physical-bridge run log and is not restated here. Not claimed, not on WetLabEngine main. No new Gemini run. No ledger claim. WetLabEngine main remains be1ab286.", "refs": [{"type": "pr", "label": "WetLabEngine PR #111", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111"}, {"type": "commit", "label": "d89190d", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/d89190d03c2bede3614f4fefcce77b149e31b13d"}, {"type": "commit", "label": "8a86d82", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/8a86d82d5311f9aaa0f4b7a1d8559a8ce53f1c3f"}, {"type": "commit", "label": "8c4f659", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/8c4f659431174f9db69d185909ba034b0ad01bb4"}, {"type": "pr-comment", "label": "comment 6788278415", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6788278415"}, {"type": "pr-comment", "label": "comment 6799790426", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/pull/111#issuecomment-6799790426"}, {"type": "commit", "label": "be1ab28", "repo": "WetLabEngine", "url": "https://github.com/proteinfoldingengine/WetLabEngine/commit/be1ab2865e82cd16857f0a189c75f201cde45577"}], "status_label": "Not claimed · not on main", "location": "research_branch", "source": "live WetLabEngine PR #111, research tip 8c4f6594, and this wiki branch (public)", "does_not_show": "A coordination note of a wiki reading. It is not a research result, not a Gemini verdict, and not a claim-status change. The agent thread and the research tip are not WetLabEngine main."}
{"id": "2026-11-11-merges-pr12-17", "date": "2026-11-11", "time_mst": "8:24 AM", "datetime_mst": "2026-11-11T08:24:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki main", "channel_type": "pr-event", "summary": "At Aaron's request to publish the open wiki pull requests, the Wiki Bot merged #12 through #17 between 8:24 and 8:25 AM MST as d4f40411, 867ab393, e389cdeb, 1c56cf5b, 24efe86d and fe779442. The GitHub merger login is the shared proteinfolding-grokbot account. The request is summarized, not quoted. No claim status changed, and WetLabEngine main stayed be1ab286.", "refs": [{"type": "pr", "label": "wiki PR #12", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/12"}, {"type": "pr", "label": "wiki PR #13", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/13"}, {"type": "pr", "label": "wiki PR #14", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/14"}, {"type": "pr", "label": "wiki PR #15", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/15"}, {"type": "pr", "label": "wiki PR #16", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/16"}, {"type": "pr", "label": "wiki PR #17", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/17"}, {"type": "commit", "label": "d4f4041", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/d4f40411ad5e3d6b287f554848f4d66ec8144f2d"}, {"type": "commit", "label": "867ab39", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/867ab393012e309964426287dd9f9a1309df2346"}, {"type": "commit", "label": "e389cde", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/e389cdebc9cbd93237b49a61a12bf23ca06b8d34"}, {"type": "commit", "label": "1c56cf5", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/1c56cf5bf9ec7a63be682deb56001d31961b39c8"}, {"type": "commit", "label": "24efe86", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/24efe86dab14c5c81307bcbb9706d80ad96406f7"}, {"type": "commit", "label": "fe77944", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/fe77944265b202982d4527a88bdb3e613069eef1"}], "status_label": "Not claimed", "location": "wiki_main", "source": "GitHub pull request record (public) and this wiki task (Aaron's publish request summarized)", "does_not_show": "A wiki merge publishes wiki pages onto wiki main. It does not move WetLabEngine research-branch or agent-thread work onto WetLabEngine main, and it changes no claim status."}
{"id": "2026-11-11-publish-pr21", "date": "2026-11-11", "time_mst": "8:26 AM", "datetime_mst": "2026-11-11T08:26:00-07:00", "from": "Retained Atlas Wiki Bot", "to": "wiki main", "channel_type": "pr-event", "summary": "Wiki PRs #18 and #19 stayed open because GitHub stacked-PR rules blocked a direct merge after #12-#17 merged. Their content was published through PR #21, merge 9dd19b00, at 8:26 AM MST. PR #21's description says the content was unchanged. #18 and #19 were still open when this page was written. No claim status changed.", "refs": [{"type": "pr", "label": "wiki PR #18", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/18"}, {"type": "pr", "label": "wiki PR #19", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/19"}, {"type": "pr", "label": "wiki PR #21", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/pull/21"}, {"type": "commit", "label": "9dd19b0", "repo": "wiki", "url": "https://github.com/proteinfolding-grokbot/retained-atlas/commit/9dd19b00329687589a54fc75f15806932c6445ea"}], "status_label": "Not claimed", "location": "wiki_main", "source": "GitHub pull request record, PR #21 description (public)", "does_not_show": "A wiki merge publishes wiki pages onto wiki main. It does not move WetLabEngine research-branch or agent-thread work onto WetLabEngine main, and it changes no claim status. #18 and #19 remaining open is a GitHub stack rule, not a scientific hold."}