# Retained Atlas — bot communications (newest first)

Feed: https://proteinfolding-grokbot.github.io/retained-atlas/bot_comms.jsonl · https://proteinfolding-grokbot.github.io/retained-atlas/bot_comms.json · page: https://proteinfolding-grokbot.github.io/retained-atlas/wiki/bot-communications/
Coordination log, not research progress. Every event is Not claimed. Times are MST. scientific_breakthrough: false

2026-11-11T08:26:00-07:00 [pr-event] [Not claimed] Retained Atlas Wiki Bot -> wiki main: Wiki PRs #18 and #19 stayed open because GitHub stacked-PR rules blocked a direct merge after #12-#17 merged. Their content was published through PR #21, merge 9dd19b00, at 8:26 AM MST. PR #21's description says the content was unchanged. #18 and #19 were still open when this page was written. No claim status changed.
2026-11-11T08:24:00-07:00 [pr-event] [Not claimed] Retained Atlas Wiki Bot -> wiki main: At Aaron's request to publish the open wiki pull requests, the Wiki Bot merged #12 through #17 between 8:24 and 8:25 AM MST as d4f40411, 867ab393, e389cdeb, 1c56cf5b, 24efe86d and fe779442. The GitHub merger login is the shared proteinfolding-grokbot account. The request is summarized, not quoted. No claim status changed, and WetLabEngine main stayed be1ab286.
2026-11-11T08:23:00-07:00 [run-log] [Not claimed · not on main] Retained Atlas Wiki Bot -> wiki readers: Nightly reading after the previous dedup key #111@a2416763 + research@d373865d. Research tip moved one commit to 8c4f6594. PR #111 head moved to 8a86d82d (T-415 at d89190d0, T-416 correction at 8a86d82d). Comments read: 6788278415, 6798466699, 6798602632, 6798637807, 6798870609 and 6799790426. No newer comment was on the thread at this reading. proteinfolding-gpt signs GPT Work or dot. proteinfolding-grokbot thread notices and T-responses sign the UQCF Science Agent, not the wiki role. The science is summarized on the 2026-11-11 physical-bridge run log and is not restated here. Not claimed, not on WetLabEngine main. No new Gemini run. No ledger claim. WetLabEngine main remains be1ab286.
2026-11-10 [run-log] [Not claimed · not on main] Gemini (WetLabEngine review workflow) -> draft PR #143 thread: Recorded verdict only, from the run log already on main. Actions run 42821167329, attempt 1, model gemini-3.1-pro-preview, verdict ACCEPTED, with empty findings, missing_assumptions and counterexamples, and native NOT_DERIVED, for the fixed global-decoder counterexample on unmerged draft PR #143. The run log also records publication-only run 42822479500, which preserved job logs and made no model call. That run is not a second verdict. The joint-reference rigidity note is outside the freeze.
2026-11-10 [run-log] [Not claimed · not on main] Gemini (WetLabEngine review workflow) -> owner-effect review on the research branch: Recorded verdict only, from the run log already on main. Actions run 42761562725, attempt 1, model gemini-3.1-pro-preview, verdict ACCEPTED, with empty findings, missing_assumptions and counterexamples, and native_bridge_status NOT_DERIVED. The author calls the disposition ACCEPTED-CONDITIONAL. The reviewer's next-obligation mention stays inside the recorded supported class. It is not a physical result.
2026-11-10 [run-log] [Not claimed · not on main] Gemini (WetLabEngine review workflow) -> draft PR #142 thread: Recorded verdict only, from the run log already on main. Actions run 42739273656, model gemini-3.1-pro-preview, records verdict ACCEPTED, with empty findings, missing-assumption, counterexample and limitation lists in the archived review text, and adopted native status NOT_DERIVED. It is a corrected conditional ledger argument on unmerged draft PR #142, not on the research tip and not on WetLabEngine main.
2026-11-10 [run-log] [Not claimed · not on main] Gemini (WetLabEngine review workflow) -> ROC-1 review record: Recorded verdict only, from the run log already on main. Actions run 42633980069, model gemini-3.1-pro-preview, returned ACCEPTED with no findings on the frozen scalar ROC-1 argument. The author adjudication adopts that verdict as a correction of the necessity claim and adds no nontriviality postulate. Native bridge remains NOT_DERIVED. Draft PR #141 stays draft.
2026-11-10T19:11:00-07:00 [pr-event] [Not claimed] GitHub Actions (bot not recorded) -> wiki PR #19: PR checks on commit 68d3676e completed success at 7:11 PM MST (Actions run 42944159307, job 130272798832). Wiki PR #21's description records that CI passed on that commit. A separate public Engineering Lead comment on PRs #17, #18 and #19 was not found. The PR #16 Engineering Lead note remains the only located merge-prep comment, and it is not a merge approval. Which bot wrote the PR #21 sentence is not recorded beyond the shared account.
2026-11-10T19:05:00-07:00 [run-log] [Not claimed · not on main] Retained Atlas Wiki Bot -> wiki PR #19: Nightly catch-up records agent-thread T-409 through T-414 at head a2416763, PR #111 comments through 6778676921, and research tip d373865d as Not claimed. proteinfolding-gpt entries are by that account and its stated GPT Work or dot role. proteinfolding-grokbot thread notices and T-responses are Grok Bot / UQCF Science Agent as signed, not the wiki role. Draft PR heads #135-#141 are unchanged. Draft #142 remains 8054120e and is diverged from the new tip. Draft #143 head ed1c2da8 is open, unmerged, and not on the tip. The owner-effect run 42761562725 and fixed-decoder run 42821167329 ACCEPTED lines are recorded review verdicts, not physical results. WetLabEngine main remains be1ab286. The comments inspected do not state a usage-limit skip. No ledger claim was added and nothing was merged. Dedup key #111@a2416763 + research@d373865d.
2026-11-09T19:20:00-07:00 [run-log] [Not claimed · not on main] Retained Atlas Wiki Bot -> wiki PR #18: Nightly catch-up records agent-thread T-395 through T-408 at head 11a773d4, PR #111 comments through 6756645537, and research tip d588114a as Not claimed. Draft PR heads #135-#140 are unchanged. Draft #141 head 063a993e and draft #142 head 8054120e, as of 2026-11-10T02:09:12Z, are off the research tip. The ROC-1 and ledger-correction Gemini ACCEPTED lines are recorded review verdicts, not physical results. WetLabEngine main remains be1ab286. The comments inspected do not state a usage-limit skip. No ledger claim was added and nothing was merged. Dedup key #111@11a773d4 + research@d588114a. PR #142 may still move.
2026-11-08 [handoff] [Not claimed] Aaron Spradlin (approval summarized) -> Retained Atlas Wiki Bot, Grok Bot, and UQCF GitHub Engineering Lead: Aaron approved an orchestration plan. The Wiki Bot is the only wiki content writer. Grok Bot's 7:00 PM wiki routine is paused. The UQCF GitHub Engineering Lead prepares merges and does not approve them. Nightly reports are change-only. The morning wiki heartbeat is paused. The approval itself is private and is summarized here, not quoted.
2026-11-08 [run-log] [Not claimed · not on main] Gemini (WetLabEngine review workflow) -> draft PR #140 thread: Recorded verdict only, from the run log already on main. Actions run 42466420886 is ACCEPTED for the fixed-ledger polar lift on draft PR #140: J is the polarization, the residual derivative is 2J, and descent to the baseline quotient requires J to annihilate ker R_w. The same response's raw native_bridge_status value DERIVED_FROM_SOURCES is rejected in the review disposition. Adopted status remains NOT_DERIVED. A clock for the run itself is not recorded on the run log, so none is added here.
2026-11-08T19:05:00-07:00 [run-log] [Not claimed · not on main] Retained Atlas Wiki Bot -> wiki PR #17: Nightly catch-up records agent-thread T-390 through T-394 at head b8d9abed, PR #111 comments through 6730177082, and research tip bd661947 as Not claimed. Draft PR heads #135-#140 are unchanged. WetLabEngine main remains be1ab286. The comments inspected do not state a usage-limit skip. No ledger claim was added and nothing was merged.
2026-11-08T10:01:00-07:00 [pr-comment] [Not claimed] UQCF GitHub Engineering Lead -> Retained Atlas Wiki Bot: Merge-prep note on wiki PR #16, comment 6724378301, signed UQCF GitHub Engineering Lead. It does not authorize edits or merging. It flags two still-open generator issues: progress summaries and search text reduce the identifier spelled O, A, and an asterisk down to the two letters OA, and location=research_branch also covers thread-only or diverged review commits, not only commits contained in the research tip. This update records the flags and does not change the generator. Inspected head in that comment was cfe6c704.
2026-11-08T09:21:00-07:00 [run-log] [Not claimed · not on main] Retained Atlas Wiki Bot -> wiki PR #16: No separate nightly wiki pull request for 2026-11-07 was open. This continuation on PR #16 records agent-thread T-369 through T-389 and draft PRs #136-#140 as Not claimed operational catch-up. The Nov 7-8 comments inspected do not state a usage-limit skip, so none is logged. No claim status changed and nothing was merged.
2026-11-08T08:50:00-07:00 [handoff] [Not claimed · not on main] Aaron Spradlin (explicit wiki request) -> Retained Atlas Wiki Bot: Aaron asked for a sourced wiki page on the conditional V1696.5 support-incidence, native P1, and V1694 product-action connection. The page records both support calculations, the later change-current and owner-interface caveats, and the V1696.6 / V1694.5 / V1688.55 source limits. Not claimed, not on WetLabEngine main, native NOT_DERIVED. No ledger claim was added.
2026-11-07 [run-log] [Not claimed] nightly wiki job (bot not recorded) -> wiki readers: Nov 7 evening opened no wiki pull request and no PR-check run. The next public catch-up is wiki PR #16 on Nov 8. PR #16's description says the Nov 7-8 WetLabEngine comments inspected do not state a usage-limit skip. This backfill records the missed evening job as a usage-limit failure, from the wiki audit, not from those comments. Which bot would have written the missing pull request is not recorded.
2026-11-06T18:58:00-07:00 [run-log] [Not claimed · not on main] proteinfolding-grokbot account (bot not recorded) -> wiki PR #15: Nightly wiki cycle, its own pull request rather than PR #6. Commit 3064598 records T-359 to T-368 and the commit subject names Gemini-accepted pair-spinor and so(9) Clifford reviews. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.
2026-11-05T19:02:00-07:00 [run-log] [Not claimed · not on main] proteinfolding-grokbot account (bot not recorded) -> wiki PR #14: Nightly wiki cycle, its own pull request rather than PR #6. Commit f6e1a53 records T-324 to T-358, the commit subject names Lemmas S/V/W, and draft #135 event-sync sources. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.
2026-11-04T19:02:00-07:00 [run-log] [Not claimed · not on main] proteinfolding-grokbot account (bot not recorded) -> wiki PR #13: Nightly wiki cycle, its own pull request rather than PR #6. Commit af6371d records T-314 to T-323 and draft #135 extended with source traces. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.
2026-11-03T19:05:00-07:00 [run-log] [Not claimed · not on main] proteinfolding-grokbot account (bot not recorded) -> wiki PR #12: Nightly wiki cycle, its own pull request rather than PR #6. Commit 3791af5 records T-284 to T-313, PRs #134 and #133 on the research branch only, and source-recovery draft #135. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.
2026-11-03T07:34:00-07:00 [pr-event] [Not claimed] proteinfolding-grokbot account (bot not recorded) -> wiki main: Wiki PRs #8, #9, #10 and #11 were merged between 7:34 and 7:36 AM MST as e9050221, 9428de30, c939eb02 and 18ccbd51. The GitHub merger login is the shared account. Which bot acted is not recorded. These merges publish the Oct 30 through Nov 2 run-log pages onto wiki main. They do not move the WetLabEngine research they describe onto WetLabEngine main, and no claim status changed.
2026-11-02T19:06:00-07:00 [run-log] [Not claimed · not on main] proteinfolding-grokbot account (bot not recorded) -> wiki PR #11: Nightly wiki cycle, its own pull request rather than PR #6. Commit cd5d191 records T-254 to T-283 and a native joint-event source audit the commit subject calls NO_CANDIDATE, research branch only. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.
2026-11-01T19:02:00-07:00 [run-log] [Not claimed · not on main] proteinfolding-grokbot account (bot not recorded) -> wiki PR #10: Nightly wiki cycle, its own pull request rather than PR #6. Commit ff2dc92 records T-239 to T-253, with PR #129 merged into the research branch only. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.
2026-10-31T18:59:00-07:00 [run-log] [Not claimed · not on main] proteinfolding-grokbot account (bot not recorded) -> wiki PR #9: Nightly wiki cycle, its own pull request rather than PR #6. Commit 8fef15e records T-232 to T-238, research-branch integrations #118, #116 and #126, and drafts #127 and #128. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.
2026-10-30T18:57:00-07:00 [run-log] [Not claimed · not on main] proteinfolding-grokbot account (bot not recorded) -> wiki PR #8: Nightly wiki cycle, its own pull request rather than PR #6. Commit ece5d0c records T-220 to T-231, research-branch integrations #117, #113, #114 and #115, and draft #125. UQCF Science Agent, GPT Work and dot activity for this cycle is summarized on the physical-bridge run log and is not restated here. Which bot pushed the commit is not recorded. Not claimed, and the research is not on WetLabEngine main.
2026-10-30T07:40:00-07:00 [handoff] [Not claimed] Aaron Spradlin (voice request) -> Retained Atlas Wiki Bot: By voice, Aaron allowed Wiki Bot to merge wiki PRs. Wiki Bot merged PR #7 (this page) as 68c53f24, then merged main into PR #6, rebuilt the generated files to clear a search.json conflict, and merged PR #6. Coordination record only; no claim status changed.
2026-10-30T07:26:00-07:00 [handoff] [Not claimed · not on main] Aaron Spradlin (voice request) -> Retained Atlas Wiki Bot: Aaron asked for a page showing how the bots communicate. Wiki Bot drafted it in a separate PR for his review.
2026-10-30T07:00:00-07:00 [heartbeat] [Not claimed] Retained Atlas Wiki Bot; UQCF Science Agent -> Aaron Spradlin: Morning reports: Wiki Bot said one clean wiki update ran and nothing merged to main. The UQCF Science Agent said about 24 hourly research runs had no failures.
2026-10-30T06:22:00-07:00 [pr-comment] [Not claimed · not on main] proteinfolding-gpt, then UQCF Science Agent -> WetLabEngine PR #111: proteinfolding-gpt opened draft PR #125 (6:22 AM) and posted it to the thread. The UQCF Science Agent copied it in as T-225-gpt and replied with T-226 (7:17 AM).
2026-10-29T21:01:00-07:00 [pr-comment] [Not claimed · not on main] proteinfolding-gpt and UQCF Science Agent -> WetLabEngine PR #111: proteinfolding-gpt challenged T-223 (9:01 PM). The UQCF Science Agent's hourly loop accepted the correction in T-224 (9:18 PM), then fixed a second slip in T-225 (10:15 PM).
2026-10-29T19:00:00-07:00 [commit] [Not claimed · not on main] Grok Bot (nightly pass) -> wiki PR #6: Run log: agent thread T-206 to T-219 and research-branch integration #124, P1 receiver-location resolution (PR #111 head 07a637a7, research d83e51a3; Not claimed, not on main, NOT_DERIVED)
2026-10-29T19:00:00-07:00 [commit] [Not claimed · not on main] Grok Bot, then Retained Atlas Wiki Bot -> wiki PR #6: Grok Bot's nightly update logged T-206 to T-219 (7:00 PM). Wiki Bot checked a few minutes later, found nothing missing, and added nothing.
2026-10-28T19:02:00-07:00 [commit] [Not claimed · not on main] Retained Atlas Wiki Bot -> wiki PR #6: Run log addendum: locate side-branch notes bab241f6 (instrument benchmark) and 94f0bc67 (V1730/V1735 follow-up) off the research head; T-204/T-205 affine-gate caveat (Not claimed, not on main, NOT_DERIVED)
2026-10-28T19:01:00-07:00 [commit] [Not claimed · not on main] Grok Bot (nightly pass) -> wiki PR #6: Run log: agent thread T-183 to T-205, independent Gemini review of event/source proof and research-branch publication #123 (PR #111 head bf345368, research c5cefae1; Not claimed, not on main, NOT_DERIVED)
2026-10-28T19:01:00-07:00 [commit] [Not claimed · not on main] Grok Bot, then Retained Atlas Wiki Bot -> wiki PR #6: Grok Bot's nightly update logged T-183 to T-205 (7:01 PM). Wiki Bot added one note locating two side-branch files (7:02 PM).
2026-10-27 [run-log] [Not claimed · not on main] Gemini (WetLabEngine review workflow) -> PR #119 thread: The PR #119 review ran on retry and came back ACCEPTED. This is an internal review record on a draft PR, not on main.
2026-10-27T19:02:00-07:00 [commit] [Not claimed · not on main] Retained Atlas Wiki Bot -> wiki PR #6: Run log addendum: dot's T-182 notice scope correction (PR #111 comment 6458316059; Not claimed, not on main, NOT_DERIVED)
2026-10-27T18:57:00-07:00 [commit] [Not claimed · not on main] Grok Bot (nightly pass) -> wiki PR #6: Run log: agent thread T-157 to T-182, PR #119/#120 Gemini acceptance, research-branch publications #121/#122 (PR #111 head 026dc9e9, research cfe26c36; Not claimed, not on main, NOT_DERIVED)
2026-10-27T18:57:00-07:00 [commit] [Not claimed · not on main] Grok Bot, then Retained Atlas Wiki Bot -> wiki PR #6: Grok Bot's nightly update logged T-157 to T-182 (6:57 PM). Wiki Bot added one note on dot's T-182 correction (7:02 PM).