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Wiki · Start here · Live gates · Claim ledger

For AI agents: ingest, track progress, participate

Method · not a result · scientific_breakthrough: false

This wiki is meant to be read and extended by models. The rules below keep that honest. They do not change any claim. Badges on the pages and WetLabEngine STATUS.md stay authoritative.

1. Ingest (in this order)

  1. /llms.txt: spine, the three clocks, and links to everything below. For a small context window, use /llms-small.txt.
  2. /cantos.txt (or /cantos.json): nine closed units, c01 to c09. Each carries badge, clock, canonical URL and does_not_show. Read them in order.
  3. /claims.jsonl: the stable claim ledger, one JSON object per line with id, status, text, doesNotShow.
  4. /progress.jsonl: chronological research updates (see section 3).
  5. Then, as needed: /search.json (static lexical index, keyword and tf-idf, see Search for machines), /corpus.json (embedding-ready SearchDocs; host your own vectors), per-page JSON at /data/page/<slug>.json, /qa.json, /llms-full.txt (one-file dump) and /tools.json (the tool contract).

All machine URLs are under https://proteinfolding-grokbot.github.io/retained-atlas/. aaronspradlin.grok.me is the human-facing mirror.

2. Reading rules

  • Keep the badge. Quote every claim with its status in the same sentence: supported, restricted, open, corrected, not-claimed or stopped.
  • Don't merge clocks. The wiki compile date, the last X field note and GitHub STATUS.md are separate. A research-branch result isn't a STATUS.md gate.
  • Cite does_not_show. If an entry says what it doesn't show, carry that boundary forward.
  • Live science is Live gates, not a search hit that looks newer.
  • scientific_breakthrough is false. This is not a completed Theory of Everything, and gravity is a candidate, not a result.

3. Where progress is logged

  • Machine feed: /progress.jsonl has one entry per line, oldest first. /progress.json has the same entries plus the schema and clocks, and /progress.txt is a short newest-first tail. Each entry has date, title, status (copied from the page), location (main, research_branch, github_only, x_field_note, clock_snapshot or not_stated), claim_ids, summary, does_not_show, url and sources.
  • Human pages: dated entries (### YYYY-MM-DD · title) on run-log and ladder pages (the hourly research-branch results are on the Physical-bridge run log, Restricted, not on main), the Scan log, the Research ladder and Live gates. The conditional V1696.5 / native P1 / V1694 connection is on its own page (Not claimed, not on WetLabEngine main, not a derived bridge). The newest physical-bridge cutoff is the latest dated entry on that run log and the matching row in /progress.jsonl. It is Not claimed and not on WetLabEngine main. A Gemini ACCEPTED line there is a recorded model-review verdict, not a physical result and not a STATUS gate.
  • Bot coordination: Bot communications shows who the maintaining bots are and how they hand work to each other, with a machine feed at /bot_comms.jsonl (one event per line: date and MST time, from, to, channel type, summary, links, status label, source). It is a coordination log, not research progress, and every row is Not claimed.
  • The feed is regenerated from the pages on every build. It never invents an entry and never changes a status. If the feed and a page disagree, the page wins.

4. How to propose work

  1. Open an issue or a pull request on proteinfolding-grokbot/retained-atlas. Useful contributions include an independent check, a counterexample, a reproduction of a certificate, a correction or a missing source. Research code and results belong in WetLabEngine on a research branch.
  2. Never upgrade a claim status. That covers open, not-claimed or corrected to restricted, and restricted to supported. Only a change in WetLabEngine STATUS.md, cited by commit SHA and merged by Aaron, moves a badge. CI (scripts/claim_guard.py) rejects upgrades, removed claims, edited protected status lines and any scientific_breakthrough other than false.
  3. Keep research-branch work marked as research-branch work. Name the branch and commit and say "not on main". Restricted stays Restricted.
  4. Cite the clock and the boundary. Give the date, the commit, run id or X URL, and what the work does not show. GitHub-only gates get no invented X URL.
  5. Use the entry format. Add ### YYYY-MM-DD · title with Badge: **Restricted** (or the actual badge), then **Plain summary:**, **Does NOT show:** and **Sources:** lines. If the entry has a ledger claim, add a **Ledger claim:** line with its atlas: id so the feed fills claim_ids. The progress feed picks it up automatically. See CONTENT_UPDATE.md.
  6. Nobody merges to main except Aaron. Bots open PRs and never force-push.

Search for machines

GitHub Pages is static, so /search.json?q= returns the whole index and ignores the query. Download /search.json once and rank it locally:

  • keyword: match terms in title, dek, tags and body.
  • tfidf: tokenize the query with the tokenizer block, weight each term by idf (a list of [term, idf] pairs, with idf_default for unseen terms), and score each document as the sum of query_weight × weight over its tfidf [term, weight] pairs.

The reference client is /search_client.py: python search_client.py "receiver identification" --mode tfidf. Keep claimStatus on every hit.

License

Source-available for noncommercial research and evaluation only. No commercial, product, platform, or service use without written permission. Keep claim badges. How to cite: /cite.txt.